Chapter 4 Molecular Basis of Inheritance
1. Multiple Choice Questions
Question 1.
Griffith worked on ………………..
(a) Bacteriophage
(b) Drosophila
(c) Frog eggs
(d) Streptococci
Answer:
(d) Streptococci
Question 2.
The molecular knives of DNA are ………………..
(a) Ligases
(b) Polymerases
(c) Endonucleases
(d) Transcriptase
Answer:
(c) Endonucleases
Question 3.
Translation occurs in the ………………..
(a) Nucleus
(b) Cytoplasm
(c) Nucleolus
(d) Lysosomes
Answer:
(b) Cytoplasm
Question 4.
The enzyme required for transcription is ………………..
(a) DNA polymerase
(b) RNA polymerase
(c) Restriction enzyme
(d) RNase
Answer:
(b) RNA polymerase
Question 5.
Transcription is the transfer of genetic information from ………………..
(a) DNA to RNA
(b) t-RNA to m-RNA
(c) DNA to m-RNA
(d) m-RNA to t-RNA
Answer:
(a) DNA to RNA
Question 6.
Which of the following is NOT part of protein synthesis?
(a) Replication
(b) Translation
(c) Transcription
(d) All of these
Answer:
(a) Replication
Question 7.
In the RNA molecule, which nitrogen base is found in place of thymine?
(a) Guanine
(b) Cytosine
(c) Thymine
(d) Uracil
Answer:
(d) Uracil
Question 8.
How many codons are needed to specify three amino acids?
(a) 3
(b) 6
(c) 9
(d) 12
Answer:
(a) 3
Question 9.
Which out of the following is NOT an example of inducible operon?
(a) Lactose operon
(b) Histidine operon
(c) Arabinose operon
(d) Tryptophan operon
Answer:
(d) Tryptophan operon
Question 10.
Place the following event of translation in the correct sequence ………………..
i. Binding of met-t-RNA to the start codon.
ii. Covalent bonding between two amino acids.
iii. Binding of second t-RNA.
iv. Joining of small and large ribosome subunits.
(a) iii, iv, i, ii
(b) i, iv, iii, ii
(c) iv, iii, ii, i
(d) ii, iii, iv, i
Answer:
(b) i, iv, iii, ii
2. Very Short Answer Questions
Question 1.
What is the function of an RNA primer during protein synthesis?
Answer:
During DNA replication, RNA primer provides 3’ OH to which DNA polymerase
enzyme can add nucleotides to synthesize new strand using parental strand of
DNA as template.
[Note : RNA primer has no direct role in protein synthesis.]
Question 2.
Why is the genetic code considered as commaless?
Answer:
The triplet codon are arranged one after the other on m-RNA molecule without
any gap or space and therefore genetic code is considered as commaless.
Question 3
Genome
Answer:
Genome is the total genetic constitution of an organism or a complete copy of
genetic information (DNA) or one complete set of chromosomes (monoploid or
haploid) of an organism.
Question 4.
Which enzyme does remove supercoils from replicating DNA?
Answer:
Super-helix relaxing enzyme (Topoisomerase) removes supercoils from replicating
DNA.
Question 5.
Why are Okazaki fragments formed on lagging strand only?
Answer:
Okazaki fragments are formed only on lagging template as only short stretch of
lagging template becomes available for replication at one time.
Question 6.
When does DNA replication take place?
Answer:
In eukaryotes DNA-replication takes place during S-phase of interphase of cell
cycle and in prokaryotes. DNA replicates prior to cell division.
Question 7.
Define term Codogen and Codon
Answer:
Codogen is a triplet of nucleotides present on the DNA which specifies one
particular amino acid.
Codon is a triplet of nucleotides present on the m-RNA which specifies one
particular amino acid.
Question 8.
What is degeneracy of genetic code?
Answer:
Genetic code is degenerate as 61 codons code for 20 amino acids, that is two or
more codons can specify the same amino acid. E.g. Cysteine has two codons,
while isoleucine has three codons.
Question 9.
Which are the nucleosomal ‘core’ histones?
Answer:
Two molecules each of histone proteins, viz. H2A. H2B, H3 and
H4 are the nucleosomal ‘core’ histones.
3. Short Answer Questions
Question 1.
DNA packaging in eukaryotic cell.
Answer:
- In
eukaryotic cells, DNA (2.2 metres) is condensed, coiled and supercoiled to
be packaged efficiently in the nucleus (10-16 m).
- DNA is
associated with histone and non-histone proteins.
- Histones
are a set of positively charged, basic proteins, rich in basic amino acid
residues lysine and arginine.
- Nucleosome
consists of nucleosome core (two molecules of each of histone proteins
viz. H2A, H2B, H3 and H4 forming
histone octamer) and negatively charged DNA (146 bps) that wraps around
the histone octamer by 1 3/4 turns.
- H1 protein
binds the DNA thread where it enters and leaves the nucleosome.
- Adjacent
nucleosomes are linked with linker DNA (varies in length from 8 to 114 bp,
average length of linker DNA is about 54 bp).
- Each
nucleosome contains 200 bp of DNA.
- Packaging
involves formation of – Beads on string (10 nm diameter), Solenoid fibre
(looks like coiled telephone wire, 30 nm diameter/300Å), Chromatin fibre
and Chromosome.
- Non-Histone
Chromosomal Proteins (NHC) contribute to the packaging of chromatin at a
higher level.
Question 2.
Enlist the characteristics of genetic code.
Answer:
The characteristics of genetic code are
- Genetic
code is triplet, commaless and non-overlapping.
- It is
degenerate and non-ambiguous.
- It is
universal
- It has
polarity.
Question 3.
Applications of DNA fingerprinting.
Answer:
Applications of DNA fingerprinting are as follows:
- In
forensic science to solve rape and murder cases.
- Finds
out the biological father or mother or both, of the child, in case of
disputed parentage.
- Used
in pedigree analysis in cats, dogs, horses and humans.
Question 4.
Explain the role of lactose in ‘Lac Operon’.
Answer:
- A
small amount of beta-galactoside permease enzyme is present in cell even
when Lac operon is switched off and it allows a few molecules of lactose
to enter into the cell.
- Lactose
binds to repressor and inactivates it.
- Repressor
– lactose complex cannot bind with the operator gene, which is then turned
on.
- RNA
polymerase transcribes all the structural genes to produce lac m-RNA which
is then translated to produce all enzymes.
- Thus,
lactose acts as an inducer.
- When
the inducer level falls, the operator is blocked again by repressor and
structural genes are repressed again. This is negative feedback.
4. Short Answer Questions
Question 1.
Human genome project.
Answer:
1. Human Genome Project (HGP) was initiated in 1990 under the International
administration of the Human Genome Organization (HUGO) and it was completed r
in 2003.
2. The main aims:
- To
sequence 3 billion base pairs of DNA in human genome and to map an
estimated 33000 genes.
- To
store the information collected from the project in databases.
- To
develop tools and techniques for analysis of the data.
- Transfer
of the related technologies to the private sectors, such as industries.
- Taking
care of the legal, ethical and social issues which may arise from project.
- To
sequence the genomes of several other organisms such as bacteria e.g.
E.coli, Caenorhabditis elegans, Saccharomyces cerevisiae, Drosophil, rice,
Arabidopsis), Mus musculus, etc.
3. Significance:
- HGP
has a major impact in the fields like Medicine, Biotechnology,
Bioinformatics and the Life sciences.
- More
understanding of functions of genes, proteins and human evolution.
Question 2.
Describe the structure of operon.
Answer:
- An
operon is a unit of gene expression and regulation.
- It
includes the structural genes and their control elements. Control elements
are promoters and operators.
- The
structural genes code for proteins, r-RNA and t-RNA that are necessary for
all the cells.
- Promoters
are signal sequences in DNA. They start the RNA synthesis. They also act
as sites where the RNA polymerases are bound during transcription.
- Operators
are present between the promoters and structural genes.
- There
is repressor protein that binds to the operator region of the operon.
- There
are regulatory genes which are responsible for the formation of repressors
which interact with operators.
Question 3.
In the figure below A, B and C are three types of
Answer:
Answer: A, B and C are A : m-RNA, B : r-RNA, C : t-RNA
Question 4.
Identify the labelled structures on the following diagram of translation.
Part A is the ………………
Part B is the ………………
Part C is the ………………
Answer:
Part A is the anti-codon.
Part B is the amino acid.
Part C is the larger subunit of ribosome.
Question 5.
Match the entries in Column I with those of Column II and choose the correct
answer.
Answer:
5. Long Answer Questions
Question 1.
Explain the process of DNA replication.
Answer:
DNA replication is semi-conservative replication. It involves following steps:
Activation of Nucleotides:
- Nucleotides
(dAMP dGMR dCMP and dTMP) present in the nucleoplasm, are activated by ATP
in presence of an enzyme phosphorylase.
- This
phosphorylation results in the formation of deoxyribonucleotide
triphosphates i.e. dATE dGTR dCTP and dTTE
Point of Origin or Initiation point:
- Replication
begins at specific point ‘O- Origin and terminates at point ‘T’.
- At the
point ‘O’, enzyme endonuclease nicks (breaks the sugar-phosphate backbone
or the phosphodiester bond) one of the strands of DNA, temporarily.
Unwinding of DNA molecule:
- Enzyme
DNA helices breaks weak hydrogen bonds in the vicinity of ‘O’.
- The
strands of DNA separate and unwind. This unwinding is bidirectional.
- SSBP
(Single strand binding proteins) remains attached to both the separated
strands and prevent them from recoiling (rejoining).
Replicating fork:
- Y-shape
replication fork is formed due to unwinding and separation of two strands.
- The
unwinding of strands results in strain which is released by super-helix
relaxing enzyme.
Synthesis of new strands:
- Each
separated strand acts as a template for the synthesis of new complementary
strand.
- A
small RNA primer (synthesized by activity of enzyme RNA primase) get
attached to the 3′ end of template strand and attracts complementary
nucleotides from surrounding nucleoplasm.
- These
nucleotides bind to the complementary nucleotides on the template strand
by hydrogen bonds (i.e. A = T or T = A; G = C or C = G, CEG).
- The
phosphodiester bonds are formed between nucleotides of new strand to form
a polynucleotide strand.
- The
enzyme DNA polymerase catalyses synthesis of new complementary strand
always in 5′ – 3′ direction.
Leading and Lagging strand:
- The
template strand with free 3′ is called the leading template.
- The
template strand with free 5′ end is called the lagging template.
- The
replication always starts at C-3 end of template strand and proceeds
towards C-5 end.
- New
strands are always formed in 5′ → 3′ direction.
- The
new strand which develops continuously towards replicating fork is called
the leading strand.
- The
new strand which develops discontinuously away from the replicating fork
is called the lagging strand.
- Maturation
of Okazaki fragments : The lagging strand is synthesized in the form of
small Okazaki fragments which are joined by enzyme DNA ligase.
- Later
RNA primers are removed by the combined action of RNase H, an enzyme that
degrades the RNA strand of RNA-DNA hybrids, and polymerase I.
- Gaps
formed are filled by complementary DNA sequence with the help of DNA
polymerase-I in prokaryotes and DNA polymerase-a in eukaryotes.
- Finally,
DNA gyrase (topoisomerase) enzyme forms double helix to form daughter DNA
molecules.
Formation of two daughter DNA molecules:
- In
each daughter DNA molecule, one strand is parental and the other one is
newly synthesized.
- Thus,
50% part (i.e. one strand of the helix) is contributed by mother DNA.
Hence, it is described as semiconservative replication.
Question 2.
Describe the process of transcription in protein synthesis.
Answer:
Transcription involves three stages, viz. Initiation, Elongation and
Termination.
(1) Initiation:
- RNA
polymerase binds to promoter site.
- It
then moves along the DNA and causes local unwinding of DNA duplex into two
strands in the region of the gene.
- Only
antisense strand functions as template.
(2) Elongation:
- The
complementary ribonucleoside tri-phosphates get attached to exposed bases
of DNA template chain.
- As
transcription proceeds, the hybrid DNA-RNA molecule dissociates and makes
m-RNA molecule free.
- As
the m-RNA grows, the transcribed region of DNA molecule becomes spirally
coiled and regains double helical form.
(3) Termination:
When RNA polymerase reaches the terminator site on the DNA, both enzyme and
newly formed m-RNA (primary transcript) gets released.
Question 3.
Describe the process of translation in protein synthesis.
Answer:
Translation involves the following steps:
1. Activation of amino acids and formation of charged t-RNA (t-RNA – amino acid
complex):
i. In the presence of an enzyme amino acyl t-RNA synthetase, the amino acid is
activated and then attached to the specific t-RNA molecule at 3’ end to form
charged t-RNA (t-RNA – amino acid complex).
ii. ATP is essential for the reaction.
2. Initiation of Polypeptide chain:
- Small
subunit of ribosome binds to the m-RNA at 5’ end.
- Start
codon is positioned properly at P-site.
- Initiator
t-RNA, (carrying amino acid methionine in eukaryotes or formyl methionine
in prokaryotes) binds with initiation codon (AUG) of m-RNA, by its
anticodon (UAC) through hydrogen bonds.
- The
large subunit of ribosome joins with the smaller subunit in the presence
of Mg++.
- Thus,
initiator charged t-RNA occupies the P-site and A – site is vacant.
3. Elongations of polypeptide chain:
Addition of amino acid occurs in 3 Step cycle-
i. Codon recognition.
Anticodon of second (and subsequent) amino acyl t-RNA molecule recognizes and
binds with codon at A-site by hydrogen bonds.
ii. Peptide bond formation.
- Ribozyme
catalyzes the peptide bond formation between amino acids on the initiator
t-RNA at P-site and t-RNA at A-site.
- It
takes less than 0.1 second for formation of peptide bond.
- Initiator
t-RNA at ‘P’ site is then released from E-site.
iii. Translocation.
- Translocation
is the process in which sequence of codons on m-RNA is decoded and
accordingly amino acids are added in specific sequence to form a
polypeptide on ribosomes.
- Due
to this A’-site becomes vacant to receive next charged t-RNA molecule.
- The
events like arrival of t-RNA – amino acid complex, formation of peptide
bond, ribosomal translocation and release of previous t-RNA, are repeated.
- As
ribosome move over the m-RNA, all the codons on m-RNA are exposed oiie by
one for translation.
4. Termination and release of polypeptide:
When stop codon (UAA, UAG, UGA) gets exposed at the A-site, the release factor
binds to the stop codon, thereby terminating the translation process
The polypeptide gets released in the cytoplasm.
Two subunits of ribosome dissociate and last t-RNA and m-RNA are released in
the cytoplasm.
m-RNA gets denatured by nucleases immediately.
Question 4.
Describe Lac ‘Operon’.
Answer:
Lac operon consists of the following components:
(1) Regulator gene:
- Regulator
gene precedes the promoter gene.
- It
may not be present immediately adjacent to operator gene.
- Regulator
gene codes for a repressor protein which binds with operator gene and
represses (stops) its action.
(2) Promoter gene:
- It
precedes the operator gene.
- It
is present adjacent to operator gene.
- RNA
Polymerase enzyme binds at promoter site.
- Promoter
gene base sequence determines which strand of DNA acts a template.
(3) Operator gene:
- It
precedes the structural genes.
- When
operator gene is turned on by an inducer, the structural genes get
transcribed to form m-RNA.
(4) Structural gene:
- There
are 3 structural genes in the sequence lac-Z, lac-Y and lac-A.
- Enzymes
produced are β-galactosidase, β-galactoside permease and transacetylase
respectively.
Inducer Allolactose acts as an inducer. It inactivates the repressor by binding with it.
Question 5.
Justify the statements. If the answer is false, change the underlined word(s)
to make the statement true.
(i) The DNA molecule is double stranded and the RNA molecule is single
stranded.
Answer:
- DNA
as the genetic material has to be chemically and structurally stable.
- It
should be able to generate its replica.
- Sugar-phosphate
backbone and complementary base pairing between the two strands, give
stability to DNA.
- Both
the strands of DNA act as template for synthesis of their complementary
strands. This allows accurate replication of DNA.
- Single
stranded RNA can be folded to form complex structures and perform specific
functions such as synthesis of proteins.
(ii) The process of translation occurs at the ribosome.
Answer:
- Translation
is the process in which sequence of codons of m-RNA is decoded and
accordingly amino acids are added in specific sequence to form a
polypeptide on ribosomes.
- Ribosome
has one binding site for m-RNA. It orients m-RNA molecule in such a way
that all the codons are properly read.
- Ribosome
has three binding sites for t-RNA : P-site (peptidyl t-RNA-site), A-site
(aminoacyl t-RNA-site) and E-site (exit site).
- t-RNAs
place the required amino acids in correct sequence and translate the coded
message of RNA.
- In
eukaryotes, a groove which is present between two subunits of ribosomes,
protects the polypeptide chain from the action of cellular enzymes and
also protects m-RNA from the action of nucleases.
- Thus
ribosome plays an important role in translation.
(iii) The job of m-RNA is to pick up amino acids and
transport them to the ribosomes.
Answer:
The job of t-RNA is to pick up amino acids and transport them to ribosomes.
t-RNA is an adapter molecule. It reads the codons of m-RNA and also
simultaneously transfer specific amino acid to m-RNA Ribosome complex. It binds
with amino acid at its 3′ end.
(iv) Transcription must occur before translation may
occur.
Answer:
In prokaryotes, translation can start before transcription is complete, as
both these processes occur in the same compartment, i.e. cytoplasm. But in
eukaryotes, transcription and processing of hnRNA occurs in nucleus. hnRNA then
comes out of the nucleus through nuclear pores and then it is translated at
ribosomes in the cytoplasm.
Question 6.
Guess
(i) the possible locations of DNA on the collected evidence from a crime scene
and
(ii) the possible sources of DNA.
Answer: